Ginkgo Datapoints

    Functional Biology

    The world leader in DRUG-seq. See how cells respond to every perturbation.

    Transcriptomics, morphology, and custom assays. Library scale. Data built for machine learning.

    Discuss your project
    384-well DRUG-seq plates per week
    100×
    384-well DRUG-seq plates per week
    DRUG-seq measurements released for open science
    1B+
    DRUG-seq measurements released for open science
    Cell-types onboarded, including primary cells
    >80
    Cell-types onboarded, including primary cells
    layer on additional profiling and target specific readouts
    Multi-omics
    layer on additional profiling and target specific readouts

    What we measure

    5 readouts & models

    DRUG-seq

    How does the transcriptome respond?

    HT-transcriptomics

    10,000+ genes per well across 384-well plates, from cell culture to AI/ML-ready counts.

    Cell Painting

    How does the cell change shape?

    High-content imaging

    Multiplexed morphological profiling with hundreds of features per cell.

    Genetic perturbation

    What happens without this gene?

    Arrayed CRISPR KO

    Arrayed whole-genome knockouts with weekly data delivery.

    Chemical & oligo

    What does this molecule do?

    Compounds · siRNA · ASO

    Full library screens, dose-response, MoA deconvolution, and on/off-target oligo screening.

    Custom models & assays

    Does it work in relevant biology?

    iPSC · primary · reporter

    iPSC neurons, primary immune cells, organoids, hepatocyte toxicity, and custom assays.

    [ Offerings ]

    Two ways in

    Profile broadly with standardized readouts, or build an assay around your biology.

    1. [ Profile at scale ]1

      Perturbation Response Profiling

      Industrialized DRUG-seq and Cell Painting at library scale across primary human cell types.

      You receive

      Transcriptomic + morphological profiles

    2. [ Answer your question ]2

      Specialized HTS

      Custom phenotypic, target-engagement, and reporter assays built around your target and biology.

      You receive

      Validated hits, leads, and targets

    • →Full library screens: 20K+ compounds
    • →MoA deconvolution by pathway activation
    • →Toxicity in HepaRG, organoid, and primary cells
    • →siRNA/ASO on/off-target screening
    • →Target engagement and nanoBRET PPI
    • →Virtual cell models (VCPI)

    [ AI/ML ]

    Data built for virtual cell models.

    A multilayer perceptron mechanism-of-action classifier trained on the ReFrame library (colored) predicts mechanisms for unannotated compounds from previous VCPI releases (grey).

    ReFrame: 13,000 curated, clinically relevant compounds. Thanks to our collaborators at the Calibr-Skaggs Institute for Innovative Medicines at Scripps Research for providing the library.

    Explore VCPI
    VCPI × ReFrame embedding
    Embedding of compound profiles: ReFrame compounds colored by mechanism of action, unannotated VCPI compounds in grey

    Functional Biology — Service Overview

    Perturbation Response Profiling and Specialized HTS in one deck

    Related datasets

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